PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004413.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 130aa    MW: 14093 Da    PI: 9.8712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004413.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.3e-072446123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ Cg+ F+r+  L  H+r+H
  Itr_sc004413.1_g00002.1 24 HICTVCGRLFNRRQALLGHMRVH 46
                             68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-62147No hitNo description
Gene3DG3DSA:3.30.160.602.8E-52246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1362446IPR007087Zinc finger, C2H2
SMARTSM003556.3E-42446IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-62446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSRNNANGSS SFNSFPPAQP QQNHICTVCG RLFNRRQALL GHMRVHGSYG WRILYPHLFN  60
RDHLANVLPR PGIPAVGGQV AVAPPSPIAV PSPLANNAPL AQPEVPVELS DLNESQHYRV  120
PGLNFPPPPA